rs46691028 SNP Detail

Summary

• ID
  rs46691028
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:125567133 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACTTTCTTT TTGCACCTCC ACATTTGGCA AACACGAAAG
  GAATGGCTAA ATCAGAACTC ATATACCCGG AACCTAGGGA GACAGGATCA GGGGAGTGGA
  R
  GGTGGGAGGA GGAGGGAGTA AGACTGAAAA AATCCGCTAG TACCTCTACT GCTACGCATG
  CTTCTCTTTC ATCTCTGCCT TCTCCTCTGG GTCCCACCT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147486073	ENSMUSSNP3468865	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss320497841	CHEV_2_125550949	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46691028					SNP	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:125567133 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12200	CpG island 12200	1579 bp distal
D2Dcr70	DNA Segment, Chr 2, Derry C. Roopenian 70	423 bp proximal
D2Mit398	DNA segment, Chr 2, Massachusetts Institute of Technology 398	381 bp proximal
Rr367290	regulatory region 367290	475 bp downstream
Rr564270	regulatory region 564270	1336 bp distal
Rr564271	regulatory region 564271	1333 bp distal
Rr564272	regulatory region 564272	within coordinates
Shc4	SHC (Src homology 2 domain containing) family, member 4	1065 bp upstream
Tssr26008	transcription start site region 26008	1676 bp upstream
Tssr26009	transcription start site region 26009	1522 bp upstream
Tssr26010	transcription start site region 26010	1490 bp upstream