rs46692675 SNP Detail

Summary

• ID
  rs46692675
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100823639 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAATTATAT ATTTTTTAAT
  GTGGAAGATA TGTGCAACTA ATATAATCAA AACACATTTA TCCATGTTGT TAAAAGAAAA
  TATATAATCT TCCAGATACC TTTTAAAAAT ATTTATTCTC GAGAAAGATG AATAGTGAGC
  TCCTGTGTGA TGACCACATA AAGGGAGTTC ACAGAAGGAC ATGAGCGAGT GTAAATGAAG
  Y
  GTCCACAGTG TGAGACTGAC ACTTTCTGAC TGCGTCAACC GGAGTCTATG TGGGGACCAT
  GACAGACACT TGCCAGTCAA CAGAAGTCAA ATCCAAAGGG TGAAACGTCA AAAATAAGAC
  CATGAAGACT TTTTCTACAA GAGCAGGTAG GTAAGTTACA GTGGGGCCGA TGCCTTGTGT
  AGTTTGAGTC CAGCCTTCGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135542890	ENSMUSSNP4258740	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
ss320850238	CHEV_3_100720246	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46692675					SNP	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100823639 () rs orientation: forward

Symbol	Name	Function Class
Gm40108	predicted gene, 40108	1103 bp downstream
Rr581925	regulatory region 581925	520 bp proximal
Rr581926	regulatory region 581926	614 bp proximal