rs46694415 SNP Detail

Summary

• ID
  rs46694415
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:90967237 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATTAATTT GCCTCTGGGT
  AAAGCCTTAA CTACATCTCT GACATTTCTA AAACTGTACC ACGTACATTT TGAGGGCATG
  GCTGTTGTTA AGGCTGACGT TACTCTGGCA CTACACTGGC TTCACTAACT CATATTTGTT
  GATATCCCCC TGAACCCTCC TGGGGAAATT CCCTGGGCAT GCCTACAGAG AGGGGAAGAA
  Y
  GACAGTAGAG CCCTCCCTGG GATTCTCAAA ATCACCAAGG TCTTTTCTCT CAAGCTATTA
  CATACACGTC ACTCTAAATG AAATTTTTAA TGTTATCCCT TGTTACTAGG CTACTTGACA
  TGCTTCAAAA AAAATCATGT TATCTTTATA AATCTTGTAA CTATCCTGTG AAAAGCAGAG
  TCATGCCATA TCCCATTTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss133380408	ENSMUSSNP2820500	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs46694415					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:90967237 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17729	CpG island 17729	918 bp distal
Iqsec1	IQ motif and Sec7 domain 1	1471 bp upstream
Rr399767	regulatory region 399767	896 bp downstream
Rr634357	regulatory region 634357	1573 bp distal
Rr634358	regulatory region 634358	1080 bp distal
Rr634359	regulatory region 634359	1514 bp distal
Tssr62060	transcription start site region 62060	1807 bp upstream
Tssr62061	transcription start site region 62061	1575 bp upstream
Tssr62062	transcription start site region 62062	1563 bp upstream
Tssr62063	transcription start site region 62063	1429 bp upstream