rs46696175 SNP Detail

Summary

• ID
  rs46696175
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:77920921 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGCTAGCA TGGGGGTCAG
  CTCTTTTGCT CTCATACCCC CAGGACCAGT TCTCCCATGA TGCCCAGGTG AGTGGTGGGG
  CAGTTCTGCA CAACCTTCAG ACATCAACAT GTCCCCAGGC AGCAGCACAG ATCAGGGACC
  TCTGCCTGGC TTTTGGTGGT AACAGACCCC TGCTACTCCA GAGCCACTGA CCCAGACATG
  R
  CCCTCAATGG AGCATAGGCC AGGACCCCAC CATGATCCTA GTGGCATCAC ATCACAGATG
  TGGCCACTCA CATCAAGCTG TTCCTCACTA CCCTCAAGTC TCTACATCTG CCTCTCTCCC
  TTATACTCAC ATCCTTCTGT TTCTCTTTCT CTTCCATTTC TCCACCGCTG ATTGCTTGGG
  TCTCTGAGTA TCTGGGGTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss136663623	ENSMUSSNP5875327	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs46696175					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:77920921 () rs orientation: forward

Symbol	Name	Function Class
Gm23609	predicted gene, 23609	333 bp downstream
Gm39375	predicted gene, 39375	1379 bp upstream
Gm69108	predicted gene, 69108	within coordinates
Rr683457	regulatory region 683457	397 bp proximal