rs46697048 SNP Detail

Summary

• ID
  rs46697048
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:37229651 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCTACACA GTGAAGAACA
  CTAAATAAAC ACATACTCAA ATACGTTACT AATGAGTTAC AGTAATTTGG CTTGGTGAGT
  CATTCAGTTT GTGAGTTGCT GACTGTTTAC ATCCATTTGG ATCATGCTGC ACACTCACTG
  GCCCCTCACT TTCCTATGTG AGGACTGCTT GGGCACAACT CTCAAGTCAT GTGGGCTGTG
  R
  ACATATGACT CCAAAGTAAA TAAAGGCTGC CTTTTCAAAA TAGGTGAAAT ATTCCCCCGT
  CTCTGCTTCC AAAGAAAGAT TTATAGAGAA AACCAGTTAT CTCAGATAAA AGGGGGGGGG
  GGGGAATCAA CTGACCTCTT TAAGCACTCA AGTGAACTTT TATGTGTTGT TGGCAACATT
  TGGCTCAGAT TTATAATGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61768035	NES17689001	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46697048					SNP	G	G	G	G	G	G	G	G	G	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61768035	NES17689001	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:37229651 () rs orientation: forward

Symbol	Name	Function Class
F13a1	coagulation factor XIII, A1 subunit	within coordinates
Rr271551	regulatory region 271551	251 bp distal
Rr279043	regulatory region 279043	333 bp distal
Rr283270	regulatory region 283270	within coordinates