rs46697640 SNP Detail

Summary

• ID
  rs46697640
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:72322729 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tgacttgga cctcgatctg tagaccaggc
  tagcctgaaa ctcacagaga tccacctgtc tctgcctctt gagtgctgga attaaagtca
  tatgtcacca ccacctggGA ACAGTTTGCT TTGGGTTAAG AGTAAACCCA AAACccggac
  R
  tggtggcgca cgcctttaat cccagcactc gggaggcaga ggcaggcgga tttctgagtt
  cgaggccagc tggtctacaa agtgaattcc aggacagcct gggctaataa aaagaaaccc
  tgtctagaaa aaaacaaaaA AAACAAAACA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss144651919	ENSMUSSNP1627603	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
ss319788274	CHEV_1_72330144	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46697640					SNP	A	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:72322729 () rs orientation: forward

Symbol	Name	Function Class
Cpgi355	CpG island 355	466 bp proximal
Pecr	peroxisomal trans-2-enoyl-CoA reductase	within coordinates
Tmem169	transmembrane protein 169	825 bp upstream
Tssr114	transcription start site region 114	702 bp downstream
Tssr115	transcription start site region 115	718 bp downstream
Tssr116	transcription start site region 116	735 bp downstream
Tssr7298	transcription start site region 7298	797 bp upstream
Tssr12164	transcription start site region 12164	654 bp downstream
Tssr12165	transcription start site region 12165	678 bp downstream