rs46700102 SNP Detail

Summary

• ID
  rs46700102
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:52650391 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGTCACT TAGCTGCCAC
  ACATTTCTCA AGCTCCCACA CAGACGTAGG AGAACAGCGA GCCTCCCAGC GTGCCGGATA
  GCGGACTGCT TAGAGAACTC ACTCCCCTCC CCAGGCCTCT AGAGGAAGGC TCTTACCCAA
  CATGCACCAG GAGCTAATTT GCATAACCCC AAGGTAAACC ACACGGACCC ACGCCGCCAG
  M
  GTGATCCCCA CTAAGCAGCA GGGGTTCATG AGCATAGCTA CACAGTTTCA CTGAAAAAAC
  TTTTTCTTTG TTCCCGGGTT TACTGGGAGG CTAGGAGAAA AACGCGGGTC AAAGTCACCC
  TAACTTAAAA AGTCAGGAAT TCTTCGTCCT TATATAGTCC ACGGCTAGAC ACTACGATCG
  TGCTCGCTTC GGCAGCACAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss137738333	ENSMUSSNP1649530	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs46700102					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:52650391 () rs orientation: forward

Symbol	Name	Function Class
1700031P21Rik	RIKEN cDNA 1700031P21 gene	1286 bp upstream
Cpgi4596	CpG island 4596	within coordinates
Cpgi4597	CpG island 4597	1033 bp proximal
Gm23296	predicted gene, 23296	877 bp downstream
Gm24859	predicted gene, 24859	180 bp upstream
Gm35239	predicted gene, 35239	1229 bp upstream
Gm59577	predicted gene, 59577	817 bp downstream
Rr369517	regulatory region 369517	1076 bp upstream
Rr403283	regulatory region 403283	45 bp upstream
Rr403284	regulatory region 403284	808 bp upstream
Rr466025	regulatory region 466025	1301 bp distal
Rr466026	regulatory region 466026	725 bp distal
Rr466027	regulatory region 466027	746 bp proximal
Rr466028	regulatory region 466028	1275 bp proximal
Tssr116285	transcription start site region 116285	1260 bp upstream
Tssr116286	transcription start site region 116286	1237 bp upstream