rs46700362 SNP Detail

Summary

• ID
  rs46700362
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:38783259 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAGAATAG CTAAAGGCAG
  AAGAGAGAGA ATCTGGCTGT CTGGGTTCAA ATCCAGCCCT TGTCTCTTAA TACCCACAGC
  CCAGAGTGAG TTATTTAACC TTAAATGCCC AACTTAAAAC ACCCTAATAG CAGATCTTAC
  TGCTGAGCTG TTAGCACTGA ATACTAATGA CTTCAAGAAA AACTGCTTCC TGTATACAGA
  Y
  TCAAATAAAA GCTTTCATTA CGTACACTCT TTCAAAAATT TAACATCAAG AGGTTTTAGT
  TTCTTATAAA TAGAAATGTG CCAGTCAAAC ATGATATAGA ATCTATACCA TAGATGGAGC
  TACTGCTCAG AAAGTCTCTT GGCCAAGGAC AGAACAAGGT TTTAAGCATC CTGAAGGCAA
  TTTGGGAGGT CATTTTTAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss52235577	NES15208499	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs46700362					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52235577	NES15208499	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:38783259 () rs orientation: forward

Symbol	Name	Function Class
Gm66419	predicted gene, 66419	within coordinates
Rr429908	regulatory region 429908	674 bp proximal