rs46700377 SNP Detail

Summary

• ID
  rs46700377
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:59651925 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    accttggct acaagatcat actgtcatgt
  cagaaagaca aaCTTCTAAA ACAAAGTCTA TGTTCTAAAA TTTAGCATTG TTTAAGATTA
  CCACATATGA CAACCATAAA TACTACCTAC CCATAAATGT GAAGAAAACA AGATTTTTTT
  W
  AAAAAAGCAA GCACATAAAA AAATCATGAA AAAATATTGA AAGTATGAAA CACAGGAGTC
  ACACCTGTGG TTTCAAGCAC TGAAGGGAGA AGGTGGGGTG GATCACCAGC TCCATTGACA
  GTGGGATACA TATCATGTCT GACACTAAGT                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss144685493	ENSMUSSNP1260288	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	T
ss322224974	CHEV_7_67147063	CHEVERUD	SCREENING_POP	f	SNP				A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46700377					SNP	T	A	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:59651925 () rs orientation: forward

Symbol	Name	Function Class
Del(7Ube3a-Snrpn)1Alb	Deletion, Chr 7, Beaudet 1	within coordinates
Gm38393	predicted gene, 38393	Intron
Gm72353	predicted gene, 72353	1487 bp upstream
Rr647544	regulatory region 647544	997 bp proximal
Rr647545	regulatory region 647545	1498 bp proximal
Snrpn	small nuclear ribonucleoprotein N	Intron
Snurf	SNRPN upstream reading frame	Intron
Tssr66968	transcription start site region 66968	1512 bp upstream
Tssr72702	transcription start site region 72702	806 bp downstream
Tssr72703	transcription start site region 72703	884 bp downstream
Tssr72704	transcription start site region 72704	961 bp downstream
Tssr72705	transcription start site region 72705	987 bp downstream
Tssr72706	transcription start site region 72706	1789 bp downstream