rs46700379 SNP Detail

Summary

• ID
  rs46700379
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:40586126 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTTGTGTC CTCCATCAGA
  ACCTCAGCCG AGCTGGGGAC CCGCTGACAC CCACCGCCGA CCCGAGGCTC GCCCTCGAGG
  CGGCTCCCTA CAGGAATGTT TCAGGGGGGC GGAAGGACCA GCATCCCCAA GCCTGCGCCC
  CGCAACCTGG AGGACCTGGA CTCGGTGCAG CGCGTCCTGC TACACAGGTC AGTGTGGCTC
  Y
  GGGGATGCAA CCAGGCTGGG CGCAGCGGCG GGGTTCGGCT AGGTGCAGGG CTCCTATCCC
  AGAGTGGGTT CTGGGGACTC GCAGAGACTC TAGACCAGTG CCAATGCTCT GGACTATAAG
  AACCTAAGCT GTCTCTGTCA CGCTGCTCTG CACTTTCTGC AGGGATTTGG GGAGGAAACT
  GGGAGCTTTG CCTGGACTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60393094	NES15896415	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs46700379					SNP	C	C	C	T	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60393094	NES15896415	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:40586126 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13107	CpG island 13107	within coordinates
Intu	inturned planar cell polarity protein	within coordinates
Rr77556	regulatory region 77556	within coordinates
Tssr28946	transcription start site region 28946	948 bp downstream
Tssr28947	transcription start site region 28947	821 bp downstream
Tssr28948	transcription start site region 28948	545 bp downstream
Tssr28949	transcription start site region 28949	507 bp downstream
Tssr28950	transcription start site region 28950	415 bp downstream
Tssr28951	transcription start site region 28951	378 bp downstream
Tssr28952	transcription start site region 28952	351 bp downstream
Tssr28953	transcription start site region 28953	324 bp downstream
Tssr28954	transcription start site region 28954	272 bp downstream