rs46701323 SNP Detail

Summary

• ID
  rs46701323
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115570184 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAGCCCAA GTGACCCAGG
  CTGGGGAGAG AAGAGACAGT GGCCTATTGT TTTTGACGAT TATCTACCGT CAAGCTGCCT
  GTTTTCCTAC CGTCCCCTGT CCTCAGAATG CACCGATGGC TTCTGCTGCT CTCAGGAAGC
  TGAGTGCTGG GGTGGTGGTG GGGAGCTGGA GGCGTCCAAG ATTGATAAGG GGGTTGGAGG
  S
  GGGAGGATGC TGAGGGGGAC ATCCTTAAGA TATGGAGACT GCCAACCGAA AGGGCTTTGT
  CTGTGTTTAG CATCTCTGGG CTGGGGAAAG GGGGCGGGAA AGAGTCTATT TTGGGATCTG
  AATTTCACCT TTTATTTACT TGTTGGGCCT TATTTATGTT GCCAGCTGTG AGTCAGAGTG
  GAGGGTGTGT GTGTGTGTGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss149124667	ENSMUSSNP3826576	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46701323					SNP	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115570184 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16370	CpG island 16370	1163 bp distal
Msi1	musashi RNA-binding protein 1	within coordinates
Rr618244	regulatory region 618244	544 bp distal
Tssr48237	transcription start site region 48237	1789 bp downstream
Tssr48238	transcription start site region 48238	1496 bp downstream
Tssr48239	transcription start site region 48239	743 bp downstream
Tssr48240	transcription start site region 48240	107 bp downstream
Tssr48241	transcription start site region 48241	85 bp downstream