rs46703016 SNP Detail

Summary

• ID
  rs46703016
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:60059045 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGAGGAAA AAACAAGTAG
  ACTTAGAGAG ATACCAAAAA AAAAAAAATG TGTATAATAC TGGGTTATTG GAATTGGGAG
  GGTACTCACC ATTTTTGATT TTGCTTTCCA AGTCAGGTTT CAAAGAGTTT AACGAGACAG
  CACCACCACT TGCCTGAAGA GAGCAGGCTG GAAGTCAGCA TACTGTCCAA TCACAGCAAG
  Y
  TGAAGAAAAA CAACAGTTGA GGGGCAGCCA GAATTTTGTT CAAATCATGG CACCATTACC
  ACTATAGTAA GTCATCCAAT CTGGACAGGA ACTTGAAAAC ATTTTATTAA GAAGTCTATT
  GCAATGGGAA GAGGGGAGAA TCATCCCACA AAGATTCTTA AAGCTTAAAT CACAAATGTT
  TCATGGAAAG GATGGGCGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss52559996	NES15632518	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	C	T	T	T		T	C	T	T
ss324985303	CHEV_15_60018751	CHEVERUD	SCREENING_POP	f	SNP										C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs46703016					SNP	T	T	T	C	T	C	T	T	T	C	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52559996	NES15632518	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:60059045 () rs orientation: forward

Symbol	Name	Function Class
Gm2682	predicted gene 2682	within coordinates
Gm41331	predicted gene, 41331	within coordinates
Rr390810	regulatory region 390810	within coordinates
Rr502965	regulatory region 502965	172 bp proximal
Tssr4605	transcription start site region 4605	8 bp downstream
Tssr134460	transcription start site region 134460	299 bp upstream
Tssr134461	transcription start site region 134461	165 bp upstream
Tssr134462	transcription start site region 134462	63 bp upstream
Tssr134463	transcription start site region 134463	13 bp upstream
Tssr134464	transcription start site region 134464	72 bp downstream
Tssr134465	transcription start site region 134465	126 bp downstream
Tssr134466	transcription start site region 134466	139 bp downstream
Tssr134467	transcription start site region 134467	175 bp downstream
Tssr134468	transcription start site region 134468	202 bp downstream
Tssr134469	transcription start site region 134469	233 bp downstream