rs46703578 SNP Detail

Summary

• ID
  rs46703578
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16678161 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAACC CTGGCCCCGA GCCCCAGAGA
  T
  GTATTAATAA AACAGCGCAG GCTAG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148399991	ENSMUSSNP2004293	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss322112023	CHEV_7_17529585	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46703578					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16678161 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18406	CpG island 18406	218 bp proximal
Gm71929	predicted gene, 71929	1056 bp downstream
Pnma8b	PNMA family member 8B	446 bp upstream
Rr368243	regulatory region 368243	220 bp upstream
Rr642821	regulatory region 642821	867 bp distal
Rr642822	regulatory region 642822	within coordinates
Rr642823	regulatory region 642823	369 bp proximal
Rr642824	regulatory region 642824	1407 bp proximal
Tssr64660	transcription start site region 64660	409 bp upstream
Tssr64661	transcription start site region 64661	1458 bp upstream
Tssr70792	transcription start site region 70792	1413 bp downstream