rs46705268 SNP Detail

Summary

• ID
  rs46705268
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:178235370 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATCC CCCAGAACTG GAGTTGCAGA
  C
  GGTTGTGAGC TGCCATGTGT GTTCT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss146355590	ENSMUSSNP4613733	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss320159421	CHEV_1_180337936	CHEVERUD	SCREENING_POP	f	SNP		C	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs46705268					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:178235370 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1092	CpG island 1092	1135 bp distal
Efcab2	EF-hand calcium binding domain 2	within coordinates
Gm70920	predicted gene, 70920	1377 bp upstream
Gm70923	predicted gene, 70923	863 bp downstream
Rr29069	regulatory region 29069	569 bp distal
Rr372517	regulatory region 372517	767 bp downstream
Tssr10392	transcription start site region 10392	1785 bp downstream
Tssr10393	transcription start site region 10393	1771 bp downstream
Tssr10394	transcription start site region 10394	1760 bp downstream
Tssr10395	transcription start site region 10395	1735 bp downstream
Tssr10396	transcription start site region 10396	1700 bp downstream
Tssr10397	transcription start site region 10397	1245 bp downstream
Tssr15493	transcription start site region 15493	1366 bp upstream