rs46705268 SNP Detail

Summary

• ID
  rs46705268
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:178235370 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATCC CCCAGAACTG GAGTTGCAGA
  C
  GGTTGTGAGC TGCCATGTGT GTTCT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss146355590	ENSMUSSNP4613733	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss320159421	CHEV_1_180337936	CHEVERUD	SCREENING_POP	f	SNP		C	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs46705268					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:178235370 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Efcab2	EF-hand calcium binding domain 2			Intron
				Noncoding-Transcript-Variant
Gm70920	predicted gene, 70920			1377 bp upstream
Gm70923	predicted gene, 70923			863 bp downstream
Rr372517	regulatory region 372517			767 bp downstream
Rr424114	regulatory region 424114			1692 bp distal
Rr424115	regulatory region 424115			1388 bp distal
Rr424116	regulatory region 424116			1306 bp distal
Rr424117	regulatory region 424117			577 bp distal
Rr424118	regulatory region 424118			1263 bp distal
Tssr10392	transcription start site region 10392			1785 bp downstream
Tssr10393	transcription start site region 10393			1771 bp downstream
Tssr10394	transcription start site region 10394			1760 bp downstream
Tssr10395	transcription start site region 10395			1735 bp downstream
Tssr10396	transcription start site region 10396			1700 bp downstream
Tssr10397	transcription start site region 10397			1245 bp downstream
Tssr15493	transcription start site region 15493			1366 bp upstream