rs46705371 SNP Detail

Summary

• ID
  rs46705371
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:78181873 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAACCCAGT TATAAACACT
  ATATGGAGCC CAGCTTTGGA AGTTCAGCTT CCAGTCTATC CCAGGATTGC TTAACTGGCC
  ATACACCATT CTTTGTGCAC TTTTTTTTTT TTTTTTTTTT TTTTTTTTTT TTTTTTTTTA
  CCTGATGGTA AAGATGTCTA GCCTCTCTTT AAAGGGGATT TGAGGAGTTG CTCCATCCTG
  C
  CCCACAGCCT TGGGTACCTA TGTCTGGTGG AGAAACATAC CCTGTGGCCT GCTTTGAGCA
  GCCACTGGCT GGAAAGGCTG GGAAAGAAGA AGGCTGGGGC AGGGTGGGAG CAGTCACCAA
  AGCCATCACC ACCCCCCTCG GTTTGGTAAC ACCGGGAATC CCTTCCACCA CCATGAACTT
  CACTGATCAG CTCATAGTTA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss144741414	ENSMUSSNP664553	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	A/J
rs46705371					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:78181873 () rs orientation: forward

Symbol	Name	Function Class
Cpgi455	CpG island 455	1030 bp distal
D1Mit215	DNA segment, Chr 1, Massachusetts Institute of Technology 215	1123 bp proximal
Rr370614	regulatory region 370614	1288 bp downstream