rs46705841 SNP Detail

Summary

• ID
  rs46705841
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88191926 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGCACACA TATAACCCCA
  GCTTCTTAGG AAGGCTGAGG CAGGAGGACC ACAAGGTCAA GATCAGCTTG GGCTATATAG
  CAAGACAGGC TTTAAAGACA AAGTAGCAAG ATTTCGTTGG CTCTGGAGCT GAAGGCAGGC
  CCAGATGGGT GGGCAAGGGA CACAGCTGTA TTCTTGGGAC AGCTGGGGAC ACAGGCTGGA
  W
  AAGGATGCAG GTTCTGAACT AAGGTCTCCA GCGACCTTTC TTCTCATCAG AATCTCAGAT
  TACCCCAAGG TGACCTAGAC ACGAGTCCAC TCTCACAGTC ACTTCCATAG TGATTTCTGG
  AGCAGGCCAC CAAGGCACAC CACGATAGCA GTTTGGTCTA GGAAAGTCAA GGGGGCTCAC
  GAGGTTGAGG CAGCTAGACA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	SPRET/EiJ
ss350399205	MGP_WTSI_1_90160779	EVA_MGPV3	EVA_MGPV3	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	SPRET/EiJ
rs46705841					SNP	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350399205	MGP_WTSI_1_90160779	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88191926 () rs orientation: forward

Symbol	Name	Function Class
Hjurp	Holliday junction recognition protein	within coordinates
Mroh2a	maestro heat-like repeat family member 2A	1915 bp downstream
Tssr12870	transcription start site region 12870	614 bp downstream