rs46706243 SNP Detail

Summary

• ID
  rs46706243
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156349727 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGTA CATGCCTGTT GCGGCCGGCC
  C
  GCAGCTCGAA ACGAACGGTT CAACT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss145798588	ENSMUSSNP2943738	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs46706243					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156349727 () rs orientation: forward

Symbol	Name	Function Class
Csnk2a1-ps3	casein kinase 2, alpha 1 polypeptide, pseudogene 3	1936 bp upstream
Rr372288	regulatory region 372288	within coordinates
Rr421189	regulatory region 421189	within coordinates
Rr421190	regulatory region 421190	1775 bp proximal
Tssr9569	transcription start site region 9569	1917 bp upstream