rs46706470 SNP Detail

Summary

• ID
  rs46706470
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:83982120 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTGAAATG GTATTCCCTT
  CCTGATTGCT CTGAAGCTCA CAGGCTGAAC GGACTCAAAA CAGACCTTTA ATTCATGCCT
  GAGTCAAGCT CATACTTGTC GCTAAGCAGC AGTGGCTACA GGTCATAGTT ATACTAGGGA
  CAGAGAGGTA CAACTTTCCT GCTGTTACAT AAAGTAGAGA CAAAGGTTAT CTAGCTGGTG
  Y
  TGCTTGTAAA CCAAAAAGAT CCTAAGAGCA AGCATGGGAT GCAAGCTCTC AGGAGAGCAG
  AGCTAAGTCC AAGTATCATA AACACCATGG ACCAAACTAA TGTGGTGCAT CTTTAAAACC
  ATGAGTTCCA GGATTTCAGT GTTTCAAGTT CCAGTAGAGA TAGGCTTAGG ATATAAATGT
  ATATACAGAC AGACAGACAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61663099	NES17611105	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46706470					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61663099	NES17611105	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:83982120 () rs orientation: forward

Symbol	Name	Function Class
Gm31386	predicted gene, 31386	373 bp downstream
Gm60518	predicted gene, 60518	1885 bp downstream
Rr469521	regulatory region 469521	533 bp distal
Rr469522	regulatory region 469522	1951 bp proximal