rs46706576 SNP Detail

Summary

• ID
  rs46706576
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:73932906 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTGCAGGAA GCTGGGTCTT GGGTTAAAGA GCTTGGAATT
  TTGGTGACTA TTCATGTGGT CAAGTTGGAG AAGGCACGTT GCTTAGTATT TTTATTGGCC
  K
  CTCCCTTCCT TGGGAGATCA TTGTCTGTGG CCTCGCAAAT ATATTTGCAA ACTGCTGTTG
  CTGCTGCCTC AGCTGGTGCT GTTGGTGGTT GTTGGTGGT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss146558486	ENSMUSSNP5866867	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
ss321164664	CHEV_4_73660573	CHEVERUD	SCREENING_POP	f	SNP			T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs46706576					SNP	G	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:73932906 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14388	CpG island 14388	425 bp distal
Frmd3	FERM domain containing 3	within coordinates
Rr101135	regulatory region 101135	within coordinates
Rr105564	regulatory region 105564	1695 bp proximal
Tssr37633	transcription start site region 37633	995 bp downstream