rs46707181 SNP Detail

Summary

• ID
  rs46707181
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72006441 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTGGAGGA TTTTCTTCTC
  TATCTGCTAC CAGAAAACTG ACAAAATCCA GAAAGGCTAT GATAAAGAAT GAAACTTCCT
  TTTGAAGGGC ATCATCTAAT GCTGGTTATA TAACAAACAG AAAAAGAATG AAAGTATTCC
  ACTCTGAGAG AACCTTGAAC ATTTTCCTGT GTGCTTTAGC TGAACAGAGA AGTATGAGTA
  Y
  TCCTTGGCCC AAAGACAAGA CAGCTACTTT ATCCTCAAAG TAGAATCTTA AGTCCCTAAA
  TCAGCCTATT ACAAAAAACA CTCAAAGGAC AAAACTTAGA CTGAAAATCC TCTAGCTCAA
  TAATCTGTGT TACAGAACTA ATTTACCCCA TTTTTTTCTG TATTTAAAGT TCCCAGTCTA
  TACTTTTAGT ACAAAGAAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61420164	NES16798032	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46707181					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61420164	NES16798032	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72006441 () rs orientation: forward

Symbol	Name	Function Class
Rr682691	regulatory region 682691	1691 bp distal
Rr682692	regulatory region 682692	781 bp distal
Rr682693	regulatory region 682693	655 bp proximal
Tcf12	transcription factor 12	within coordinates
Tssr90473	transcription start site region 90473	217 bp downstream