rs46708426 SNP Detail

Summary

• ID
  rs46708426
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:89587138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAAAATCT TATCAAGTTT
  TAATTTGTTT ACAAATTTAA AATACAATAT ATTTTAATAT ATTAGACAAA GTATATGAAT
  ATTACCAGGC TTGAATAGTG TCAGTACTAA TAAGATTTTA TGCTATAAAT GAATTTTAAA
  TTGTGTTCAA TTTAAATATT GTACTGAAAA CTGTAATCAA ATGAACTGTG TGTAAGAAAT
  S
  GATACTCTGC CCAATGCAGG GCTTGGGCAT CTGGGAGTCT TGTCCTTGTG TGTATGTGGA
  TTTTGTGACT GGTTTAGTGG TCTCAAATTA CTGACCTCCA TTAACCTGCT TCCGCATCTG
  TGAGACAGAG TGGGGAATGT ATTTATTGTT TGTAAAGGCA TGTGAGGATG CTAGAATAAT
  GCCCATGAAA ATGAAGCCTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61194589	NES16707675	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	C	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46708426					SNP	G	G	G	G	C	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61194589	NES16707675	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:89587138 () rs orientation: forward

Symbol	Name	Function Class
Gc	vitamin D binding protein	within coordinates
Gm72766	predicted gene, 72766	within coordinates
Tssr47069	transcription start site region 47069	1912 bp upstream
Tssr51708	transcription start site region 51708	1005 bp upstream
Tssr51709	transcription start site region 51709	824 bp upstream
Tssr51710	transcription start site region 51710	329 bp downstream
Tssr51711	transcription start site region 51711	1984 bp downstream