rs46709258 SNP Detail

Summary

• ID
  rs46709258
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30259621 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAAATACTAA AAGCGCTGGG TACTCATCCA CATAGTGAGG
  ACGCTTTAAC GAGCAAAACA GGCAAAAATC CTTGCTGAGA ATGTGTCTTA TCGTGTAGAG
  R
  ATAGACGATA GTCAATAAAC AAGCCAAAAA TTCTAAGTGA AATGTAATGG GAACACACAA
  ATATGTAAAA ATACTCAATA GGGAACATCA AAGTGGGGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60990763	NES16136533	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	A	G	G		A	G	A	G		G
ss322135272	CHEV_7_31345215	CHEVERUD	SCREENING_POP	f	SNP										G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs46709258					SNP	G	G	G	G	A	G	A	G	G	G	A	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60990763	NES16136533	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30259621 () rs orientation: forward

Symbol	Name	Function Class
Lin37	lin-37 DREAM MuvB core complex component	358 bp upstream
Psenen	presenilin enhancer gamma secretase subunit	1669 bp downstream
Rr400243	regulatory region 400243	300 bp downstream
Tssr71791	transcription start site region 71791	1449 bp upstream
Tssr71792	transcription start site region 71792	1411 bp upstream
Tssr71793	transcription start site region 71793	665 bp upstream
Tssr71794	transcription start site region 71794	544 bp upstream
Tssr71795	transcription start site region 71795	354 bp upstream