rs46709901 SNP Detail

Summary

• ID
  rs46709901
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:73994738 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATCTTCTC TCAGACACAG
  GGTAGCTCTT ATGGTTTGGG GACACCGTTT TTTCCACTGC CCATTTGTCC AGGGATGCTC
  CCTGCAGGCC TGTATTAAGC TCTCCAAAAG ATGGGAGGCA AGGGTAGCCT TAACCTCTGG
  ACAACTTCAT TGTGCAAGCA ATCAGCCCTA TAACATCCAT CAACAGATGG AGAAGGTCCT
  Y
  CAACTCAAGC CTGGAATTCT GAGATCATGG CCCCCCTAGT TGAGTCCCAT CTCTGCCTTA
  GAATCCCTTC ACCAGTTCCT CCTGCCTGAG GGGTGGAGTC ACCAGTCCAG CCTAGCGCTT
  GGAGGTTCCA GTACCACCCA GCCCCCTCTG GGATACTATG CCAGATGCTG GAGAGGGTTA
  GGCTATCCTG GCCAGCCATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss61845042	NES17772392	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs46709901					SNP	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61845042	NES17772392	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:73994738 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5855	CpG island 5855	within coordinates
Gm30303	predicted gene, 30303	1022 bp upstream
Nkd2	naked cuticle 2	within coordinates
Rr482617	regulatory region 482617	983 bp proximal
Rr482618	regulatory region 482618	1112 bp proximal
Tssr123198	transcription start site region 123198	984 bp downstream