rs46710305 SNP Detail

Summary

• ID
  rs46710305
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:145879272 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATTGTTGAG TTTTAATTAA TTATTATTGT GTGCAGCCAT
  GTGTATGGTC TGAGAGTCAC ACGTGTGGAG GTCAAGGGTT CATCTCTGAG GAGTCATAGA
  W
  AGCTTCCACT GTGGATCCTG GAAATCAAAA TGAGGTCAGC AGGTTTTCCC AGCTCAGTCA
  CCTCACTGGC CAGGAACAAT TATTTTGAAT GCGAGTACC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss133984537	ENSMUSSNP1705603	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	A
ss322075153	CHEV_6_145882066	CHEVERUD	SCREENING_POP	f	SNP				A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46710305					SNP	T	T	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:145879272 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18164	CpG island 18164	486 bp proximal
D6Mit200	DNA segment, Chr 6, Massachusetts Institute of Technology 200	1794 bp proximal
Rr641246	regulatory region 641246	465 bp distal
Rr641247	regulatory region 641247	205 bp proximal
Sspn	sarcospan	within coordinates
Tssr59564	transcription start site region 59564	567 bp upstream
Tssr59565	transcription start site region 59565	591 bp upstream