rs46711904 SNP Detail

Summary

• ID
  rs46711904
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127691709 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCAGCAAT CAGATGGTGG
  CTCACCACCA TGTGCAATGG AATCCAATGC CCTGTCCTGG TATGCAGGTA TACATGCAAT
  AGAGCACTCA GATACATAAA ATAAATAAAC CTTAAAAAAA GAAAAGACTA GTACCCAAAA
  TGTCTTTAGG CCCAGCCAAG GAATTAAATA GGCAGGGACT TACAGGCTTA TTTTAAAAAG
  Y
  GGTTTTGTTT TGTTTGGGCT AGGCAGAAGC TTGTCCCTTT TGCTCACACC TAACACACAC
  ACTCTCTCTC TCTCTGTGTA CTCAGTGTCT CACAAAAACA CCCTTTCTTA TACCCAGTCT
  GTTACACTTT GTAATGTAAC CTAGTTTCTT TCTTACAACA GCATCTCACA AATCCTTCTT
  AATGGTTTCT GCCAAACATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135874553	ENSMUSSNP6497783	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320958018	CHEV_3_127600978	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46711904					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127691709 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13803	CpG island 13803	1537 bp distal
Fam241a	family with sequence similarity 241, member A	1737 bp upstream
Rr398009	regulatory region 398009	1487 bp downstream
Rr584897	regulatory region 584897	1246 bp distal
Tssr35608	transcription start site region 35608	1827 bp upstream
Tssr35609	transcription start site region 35609	1790 bp upstream
Tssr35610	transcription start site region 35610	1723 bp upstream