rs46712012 SNP Detail

Summary

• ID
  rs46712012
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135639531 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTTACCTT ATGTGAAGTC
  TTTAACTTGG CTGGTGTGTG TATTATGTAT ATGATATGTA TGTGCATGTG TATATGCCCG
  TGCGTGTGTG TGCGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
  TGTTTAGAGG CCAGAAGTTC TTGCCAGGTG TTTTTTGTCA TTGCTCTGGC AAGCACTTTA
  M
  CCATTAAGCC ATCTCTTGAG ACCCCAATTT TGGCTTTTGT TGTTATTTTA ATTAGGAAAA
  ACTCTGGGTC AGAAGCATAA GTACCTCAAA TGAAAGTACC TGATTAGACA AGCCATTTAA
  GAAATATTCG TTGTTAGTTG GTGGTGCCGT ACACCTTTAA TCCTAGCACT CAGGAGGCAG
  GACCAGGGGC AGGGGCAGGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60804033	NES16474636	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46712012					SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60804033	NES16474636	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135639531 () rs orientation: forward

Symbol	Name	Function Class
Gm57161	predicted gene, 57161	655 bp downstream
Rr419242	regulatory region 419242	240 bp distal
Tssr8966	transcription start site region 8966	398 bp downstream