rs46714503 SNP Detail

Summary

• ID
  rs46714503
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:78955590 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAAGACAA GTCTCAAAGC
  CCACCCCTAG TGACACTCCC CCAGCAACGC TGCCTCATTT TTTAAAAAAT TGAGCCCTAA
  CTTTTTAACT TCCAATAGCT AGCAAGCAAC TTAACCAATC ACTAAAATGG TTCAAAAGGA
  TGATTTCAAT AGTTACATAA AATTTCATTA TGACTTTGTC ATAACCTATT CAATCACTTC
  Y
  ATACTGGCTG ATTTAGCTGT CTTGTATTTG TTACCTTTTT TTGAGGCAGG GTCTTATTAT
  ATAAGCCAGG CTGGTCTTGC ACTTAAGATT CTCCTGTCTC CGGCTGGAGA GATGGCTCAG
  CTGGTAAGAG CACTGACTGC TTTTCCAGAG GACCTGGATT TAATTCCCAG CAACCACACG
  GTAGCTCAAC AACAACAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61654169	NES17605710	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46714503					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61654169	NES17605710	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:78955590 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4796	CpG island 4796	1554 bp distal
Plek2	pleckstrin 2	1852 bp upstream
Rr265602	regulatory region 265602	1389 bp distal
Rr387474	regulatory region 387474	1005 bp upstream
Tssr116799	transcription start site region 116799	1846 bp upstream
Tssr116800	transcription start site region 116800	429 bp upstream