rs46715204 SNP Detail

Summary

• ID
  rs46715204
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:29264577 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGATTCT TTGCTCAGGG
  TCTAGTGAGT GAGGAGGAAA CCATAGGGAT GGCTAGAGCA AGCTAGAATG TGTAGAGAAA
  GACCTTTAAT CCCAGCACTT GGAAGCAGAG GCAGGTGAAT CTAAGGTTCC AGGCTAAGCT
  AGCCAAGTAA GTTCTAGACA GCCAAGGCTA CCCAGAAACC CTGTCCCATA ACATTATACG
  Y
  CCTGTCTCAA AAGAGTAAGT AAAAGTCTTG GGGTTTTTGT AAGATTTATT TATTATATGT
  ATACACTGTA CCTGTCTTCA GACACCCCAG AAGAGGGCAT CAGGTCTCAT TGTGGATTGT
  TGTGAGCCAT CATGTGGTTG CTGGGACTTG AACTCAGGAC CTTCAGAAGA GCAGTTGGCA
  CCCTTAACCG CTGAGCCACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60559304	NES16575698	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46715204					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60559304	NES16575698	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:29264577 () rs orientation: forward

Symbol	Name	Function Class
Rr524768	regulatory region 524768	1597 bp distal
Rr524769	regulatory region 524769	within coordinates
Rr524770	regulatory region 524770	512 bp distal
Rr524771	regulatory region 524771	1256 bp proximal
Rr524772	regulatory region 524772	1475 bp proximal
Tssr143492	transcription start site region 143492	1612 bp upstream