About   Help   FAQ
rs46715311 SNP Detail
Summary
  • ID
    rs46715311
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr7:30215116 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CTCCCACTTA TCACTTCTGA
    TCCCTCGGGC TCCTGGTCTA ATGGTGTGCA GCTCCCTGGC CCGGCCTACC AGACGGTAGA
    TTTCCCATCA GAAATCTCCC AAATTCCCTT CTCAAGTAGA CTGCTCCTTA GCTAGCCCTA
    TTGTCCTTTA TCCCCGCCCT CCCCTCAGGA GTGTACCCCA TTCCAGGAGC TGACAGGCTC
    W
    AAGCGGGCTG CAGATGCATT CACAGGCTCC CCGCTTCCCT GTGGAGCTGG GCTCCGTGAG
    GGATCCAAAC GCCCAGGTGG GGCGTCTGCA TCGCCTAGCT ATGGCCAGAG GCCCATGCTG
    GGGCCTAGCC AGGCTTCTGC GCAGAGGTGA GCTTCCACTG CCGGTGTGGT GTGGGGAAAG
    AACCAACCAC GGAGGGACAA                                            
    
    W = A/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss60990907 NES16137421 PERLEGEN MM_PANEL2 f SNP T T T T T T A T T T A T T A T
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs46715311 SNP T T T T T T A T T T A T T A T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss60990907 NES16137421 PERLEGEN MM_PANEL f SNP A/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:30215116 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Arhgap33os Rho GTPase activating protein 33, opposite strand within coordinates
Tssr2186 transcription start site region 2186 455 bp downstream
Tssr65778 transcription start site region 65778 535 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
12/17/2024
MGI 6.24
The Jackson Laboratory