rs46716328 SNP Detail

Summary

• ID
  rs46716328
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:77873956 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCAAGTTGA CAAAAACTAA
  CTAGCACATT TTTATAAGCA ACCCTAATGA AATTCACTTA TTCACACACA CACACACACA
  CACACACACA CACAGAAGGG GTCTGGTTGG GAAGAAGAAG AAGATCAATA GGAAAGAGAC
  TACACATGGT AGGGGAGTGA ATGTGATCAA AATACATTAT TTCAGTATGT GAAAATGTCA
  R
  TGAAGCTGGG AGTGGTGGCG CACGCCTTTA ATCCCAGCAC TTGGGAGGCA GAGGCAGACG
  GATTTCTGAG TTTGAGGATA GCCTGGTCTA CAAAGTGAGC TCCAAGACAG CCAGGGCTAT
  ACAGAGAAAC CGTGTCTCGA AAAATAAATA AAAAAGTCAT AATGGAACCG ATTATTATGT
  ATATTAATAT ATGCTGCTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63193964	NES17463823	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46716328					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63193964	NES17463823	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:77873956 () rs orientation: forward

Symbol	Name	Function Class
D18Mit47	DNA segment, Chr 18, Massachusetts Institute of Technology 47	81 bp distal
Rr347430	regulatory region 347430	756 bp distal
Rr347431	regulatory region 347431	245 bp proximal
Rr350215	regulatory region 350215	1956 bp distal
Rr355616	regulatory region 355616	445 bp proximal
Rr356493	regulatory region 356493	650 bp distal
Rr393943	regulatory region 393943	1319 bp upstream