rs46717320 SNP Detail

Summary

• ID
  rs46717320
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:43671915 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGATTCTT GTTTTCTTTG
  GAGGAACCTC TCGTTAGAGG TTATGTGTTT TGGCTTCTGT GTGATGAAGG GGGAAATATT
  TGTGGGCTGA CTTGTCCTTT TGTCTTTTCC CTACTGTGCA AACCTCGACC ATAATTGTTT
  TAATCCACTT TCAAGTTTTG GAGTGAGAAA TATACCAAGG TGGATAGAGA ATATGGTAGC
  R
  GCAATACAGG CGTTTCTTAT TTACATGCCC GTGCATTATA AATGAAAACC AAACCCCCAA
  ACAGAAATGT TGTTCAGGGA TCTGGTGGAC ATCCGTGTTG TTTTCTAGAT CTTCCTTGCT
  CTTTCTGAGA TTTCCTGAAA TACACACCCA ATGATAGCAA GAAAGCCTGG CTTTACCCAC
  TTGGTACGGA GATCCTCTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62737766	NES17343023	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46717320					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62737766	NES17343023	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:43671915 () rs orientation: forward

Symbol	Name	Function Class
Adgrf5	adhesion G protein-coupled receptor F5	within coordinates
Rr527086	regulatory region 527086	563 bp distal
Rr527087	regulatory region 527087	169 bp distal
Rr527088	regulatory region 527088	1412 bp proximal
Tssr144671	transcription start site region 144671	994 bp downstream
Tssr144672	transcription start site region 144672	688 bp downstream
Tssr144673	transcription start site region 144673	642 bp downstream
Tssr144674	transcription start site region 144674	615 bp downstream
Tssr144675	transcription start site region 144675	568 bp downstream
Tssr148115	transcription start site region 148115	327 bp downstream