rs46717459 SNP Detail

Summary

• ID
  rs46717459
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:65138884 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGAAAAACCC ATATTATTTG TGCAGTTCTA CAAAAGTAAG
  TATGCATGTG GGCAAAGATG AATATGTTTA CCAAATGGTC TTAAATAAAT ACTTAAGCAT
  R
  AAAAAAAAAA CATGTGAATA TATATGTATT GAAGGTATGT GCATTTACAC GTGTGTGCAT
  TTGCATGCAT GTGCATGTTT ATGTGACTGT GAGTGTAGGT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss60744611	NES16381393	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs46717459					SNP	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60744611	NES16381393	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:65138884 () rs orientation: forward

Symbol	Name	Function Class
Cryga	crystallin, gamma A	668 bp downstream
Gm28845	predicted gene 28845	894 bp downstream
Tssr102	transcription start site region 102	923 bp upstream
Tssr7112	transcription start site region 7112	668 bp upstream
Tssr7113	transcription start site region 7113	783 bp upstream
Tssr7114	transcription start site region 7114	793 bp upstream
Tssr7115	transcription start site region 7115	809 bp upstream
Tssr7116	transcription start site region 7116	870 bp upstream
Tssr7117	transcription start site region 7117	898 bp upstream
Tssr7118	transcription start site region 7118	928 bp upstream
Tssr11968	transcription start site region 11968	698 bp downstream
Tssr11969	transcription start site region 11969	728 bp downstream
Tssr11970	transcription start site region 11970	902 bp downstream
Tssr11971	transcription start site region 11971	925 bp downstream
Tssr11972	transcription start site region 11972	947 bp downstream