rs46717524 SNP Detail

Summary

• ID
  rs46717524
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:5642849 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACCAGGCC GGCCTCAAAT
  TCACAGAGAT ACACTTGCCT TTGCCCTGAA ATAAAGGCCT TAAGTGACTT CTTGACCTGT
  ACTTCATTAT CAAGAAATTA CGTGGTTTGA TCAACACAAA AGCTAGAAGC TACTGGTTGT
  GTTTCTGATT TCCAAAGCCC AGGGTAATCT TTTATGATTT TATAAGTCAA CATTTTGAAC
  S
  GGAGCCCATT GGAAAACTGA AAGAGCAAGA AGGCAGTTCA GCGGGACATG TCCTCTGAAG
  CCCCATGCTG ATGCTGTGCA GTTCACTTTG CTGATGCTGT GCAGTTCACT TTGCAGATTC
  GTTAGTTGAG ACATGAGTTT TCCTGGCTCC CCTGCTAGTG AAGGTTTCCT TCTGGCTTGC
  CTTTGTTCTC TGGTGGGGCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss145954981	ENSMUSSNP3719593	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs46717524					SNP	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:5642849 () rs orientation: forward

Symbol	Name	Function Class
4930423M02Rik	RIKEN cDNA 4930423M02 gene	565 bp downstream
Cpgi13998	CpG island 13998	976 bp proximal
Fam110b	family with sequence similarity 110, member B	1160 bp upstream
Rr588322	regulatory region 588322	782 bp proximal
Rr588323	regulatory region 588323	1283 bp proximal
Rr588324	regulatory region 588324	1489 bp proximal
Tssr36378	transcription start site region 36378	1235 bp upstream
Tssr36379	transcription start site region 36379	1284 bp upstream
Tssr36380	transcription start site region 36380	1367 bp upstream
Tssr36381	transcription start site region 36381	1419 bp upstream