rs46719264 SNP Detail

Summary

• ID
  rs46719264
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:7353611 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A AGCTTGAGTT TTGATGCTGT CACAACAGTG GGAGAGAAAA
  TCTTTTTCTT TAAAGACTGG TAAGATTGTT TTCATATCTA ACCAATGTTA TGGCTGTGTG
  S
  TTAAAGTTGT TTGGTTGTCC GTTTGTCTGA AGATACTTGA ACTGATGTAC ATCAAATCCA
  TATGGCAGGA ACTTCAACTT GATTCTCAAG GTTTGGAGAG A                    
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss136190539	ENSMUSSNP3987809	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs46719264					SNP	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:7353611 () rs orientation: forward

Symbol	Name	Function Class
Mmp12	matrix metallopeptidase 12	within coordinates
Tssr2759	transcription start site region 2759	65 bp downstream
Tssr83712	transcription start site region 83712	1626 bp downstream
Tssr83713	transcription start site region 83713	1225 bp downstream
Tssr83714	transcription start site region 83714	1041 bp downstream
Tssr83715	transcription start site region 83715	997 bp downstream
Tssr83716	transcription start site region 83716	704 bp downstream
Tssr83717	transcription start site region 83717	693 bp downstream
Tssr83718	transcription start site region 83718	659 bp downstream
Tssr83719	transcription start site region 83719	626 bp downstream
Tssr83720	transcription start site region 83720	593 bp downstream
Tssr83721	transcription start site region 83721	362 bp downstream
Tssr83722	transcription start site region 83722	81 bp downstream
Tssr83723	transcription start site region 83723	34 bp downstream
Tssr83724	transcription start site region 83724	274 bp upstream
Tssr83725	transcription start site region 83725	398 bp upstream
Tssr83726	transcription start site region 83726	487 bp upstream
Tssr83727	transcription start site region 83727	1099 bp upstream
Tssr83728	transcription start site region 83728	1191 bp upstream
Tssr83729	transcription start site region 83729	1213 bp upstream
Tssr83730	transcription start site region 83730	1693 bp upstream
Tssr83731	transcription start site region 83731	1707 bp upstream
Tssr83732	transcription start site region 83732	1748 bp upstream
Tssr83733	transcription start site region 83733	1785 bp upstream
Tssr88067	transcription start site region 88067	598 bp upstream
Tssr88068	transcription start site region 88068	552 bp upstream
Tssr88069	transcription start site region 88069	106 bp upstream
Tssr88070	transcription start site region 88070	1140 bp downstream
Tssr88071	transcription start site region 88071	1804 bp downstream