rs46719539 SNP Detail

Summary

• ID
  rs46719539
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:85940924 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTCCTGTGTG ATAGTGAGGA CCTGCCTGTC ATGCCATCCT
  CATGAGTGCA TGTCAGGGAC TTACTTTTCT ATTGCTTTGA TGAGACATTA TGACCAAGGT
  R
  ACTTACAGAC AAGTGTCTAA TCTGGGACTC CCATGGGTTA GTCCGTTAAC TATCACGGCA
  GGCAACATGG TAGCAGACAG GCAGGCATGG TGCTGGAGC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148282847	ENSMUSSNP763126	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46719539					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:85940924 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7499	CpG island 7499	1228 bp proximal
Gm41375	predicted gene, 41375	within coordinates
Gramd4	GRAM domain containing 4	972 bp upstream
Rr507408	regulatory region 507408	1999 bp distal
Rr507410	regulatory region 507410	42 bp distal
Rr507411	regulatory region 507411	520 bp proximal
Rr507412	regulatory region 507412	1514 bp proximal
Rr507413	regulatory region 507413	1530 bp proximal
Tssr135780	transcription start site region 135780	1852 bp downstream