rs46722300 SNP Detail

Summary

• ID
  rs46722300
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:93872231 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTCG CGGCGGGCGC CGGCGGGCTC
  S
  GGCTCCCGCT GCGTTCCCCG CGGGT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss147378621	ENSMUSSNP483132	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss323407274	CHEV_10_93499114	CHEVERUD	SCREENING_POP	f	SNP		C	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs46722300					SNP	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:93872231 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2121	CpG island 2121	within coordinates
Fgd6	FYVE, RhoGEF and PH domain containing 6	within coordinates
Gm49628	predicted gene, 49628	568 bp upstream
Rr402165	regulatory region 402165	353 bp downstream
Tssr3327	transcription start site region 3327	within coordinates
Tssr95293	transcription start site region 95293	898 bp downstream
Tssr95294	transcription start site region 95294	314 bp downstream
Tssr95295	transcription start site region 95295	248 bp downstream
Tssr95296	transcription start site region 95296	577 bp upstream
Tssr98985	transcription start site region 98985	600 bp upstream
Tssr98986	transcription start site region 98986	582 bp upstream
Tssr98987	transcription start site region 98987	553 bp upstream
Tssr98988	transcription start site region 98988	354 bp downstream
Vezt	vezatin, adherens junctions transmembrane protein	570 bp upstream