rs46722662 SNP Detail

Summary

• ID
  rs46722662
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:26494352 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGAACCAA AATCCACCAA
  GTCCTAAAAA TAGACTCAGA AGCAAAGTTT CTGAGATACT TAATGAGGTC TGACTTCCCG
  GGGCCCTCTA GCGGCCACAG TGGAACTACA GGGGAGTTCA GTTTCTTGGA CAGAACAAAA
  TTTTCCATGG CTTTACTCTT TGATAGGAAA TTATTTTCCA AGCAGTGAGG CACTGTCTAG
  R
  CTTAATAACC TCATGCAATG CTTCCACAGG AAGATTTTGG CTAGTTCACA TTCTGTCTTT
  TGCCTTTTTG GTGTAAAGAA GGAACTGTTT TTGGTTTTGT TTTTGTTATT TTTGTTTTTT
  TTTTTTTGTT TTGTTTTGTT TTGTTTTTTT GTTTTTCTCA TGTTGACCTA GACTAGGTCA
  AGTTTCAGTG TTTCTTGAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52328578	NES15372045	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46722662					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52328578	NES15372045	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:26494352 () rs orientation: forward

Symbol	Name	Function Class
Rr464136	regulatory region 464136	within coordinates
Rsad2	radical S-adenosyl methionine domain containing 2	within coordinates
Tssr112998	transcription start site region 112998	600 bp downstream
Tssr112999	transcription start site region 112999	535 bp downstream
Tssr113000	transcription start site region 113000	434 bp downstream
Tssr113001	transcription start site region 113001	33 bp upstream
Tssr113002	transcription start site region 113002	57 bp upstream
Tssr113003	transcription start site region 113003	132 bp upstream
Tssr113004	transcription start site region 113004	192 bp upstream
Tssr113005	transcription start site region 113005	218 bp upstream
Tssr113006	transcription start site region 113006	581 bp upstream
Tssr113007	transcription start site region 113007	665 bp upstream
Tssr113008	transcription start site region 113008	833 bp upstream
Tssr113009	transcription start site region 113009	851 bp upstream
Tssr113010	transcription start site region 113010	1001 bp upstream
Tssr115902	transcription start site region 115902	1483 bp upstream
Tssr115903	transcription start site region 115903	1153 bp upstream
Tssr115904	transcription start site region 115904	1129 bp upstream
Tssr115905	transcription start site region 115905	831 bp upstream
Tssr115906	transcription start site region 115906	711 bp upstream
Tssr115907	transcription start site region 115907	652 bp upstream
Tssr115908	transcription start site region 115908	608 bp upstream
Tssr115909	transcription start site region 115909	524 bp upstream
Tssr115910	transcription start site region 115910	470 bp upstream
Tssr115911	transcription start site region 115911	422 bp upstream
Tssr115912	transcription start site region 115912	408 bp upstream
Tssr115913	transcription start site region 115913	373 bp upstream
Tssr115914	transcription start site region 115914	325 bp upstream
Tssr115915	transcription start site region 115915	282 bp upstream
Tssr115916	transcription start site region 115916	241 bp upstream
Tssr115917	transcription start site region 115917	191 bp upstream
Tssr115918	transcription start site region 115918	176 bp upstream
Tssr115919	transcription start site region 115919	145 bp upstream
Tssr115920	transcription start site region 115920	113 bp upstream
Tssr115921	transcription start site region 115921	180 bp downstream
Tssr115922	transcription start site region 115922	276 bp downstream
Tssr115923	transcription start site region 115923	359 bp downstream
Tssr115924	transcription start site region 115924	430 bp downstream
Tssr115925	transcription start site region 115925	445 bp downstream
Tssr115926	transcription start site region 115926	794 bp downstream
Tssr115927	transcription start site region 115927	838 bp downstream