rs46722900 SNP Detail

Summary

• ID
  rs46722900
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:119009094 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAACTTGCT CTGAATAAAG
  AGCTGGGGTG TCAGCAGGCT AGTTCAGTTC CAGACTCTAG GGTCCTCCTT ACCGTCTGCT
  AGTTCTTGAT TGACTTAGCT ATCTGCTCTT TGATACATAC CAATCACTGT CTCATCATCC
  CAGGCCCTGT GCTGGCAGTT GAAATATTTC CCAAACCCAC TGGCCTATTG CTCAGTGTCT
  Y
  GCTGTGACAG ATGCCACGTG ATATATTGAT ACCAGTATTG AATGTAACTT ATACACATTT
  TCTTTACTTT CTTTCTTTTT TTTCATTTAT ATATTTTTTT TTTTTGTTTT TTTGTTTTTG
  TTTTTGTTTT GTTTGGTTTG GTTTGGTTTG GTTTTTTTGA GTCAGGGTTT CTCTGTGTAG
  TCATGGCGGT CCTGGAACTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	NZW/LacJ	PWD/PhJ
ss60667036	NES16246373	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	NZW/LacJ	PWD/PhJ
rs46722900					SNP	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60667036	NES16246373	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:119009094 () rs orientation: forward

Symbol	Name	Function Class
Cdh13	cadherin 13	1378 bp upstream
Cpgi21109	CpG island 21109	1206 bp proximal
Rr670996	regulatory region 670996	1038 bp proximal
Rr670997	regulatory region 670997	1389 bp proximal
Tssr79649	transcription start site region 79649	1233 bp upstream
Tssr79650	transcription start site region 79650	1252 bp upstream
Tssr79651	transcription start site region 79651	1268 bp upstream
Tssr79652	transcription start site region 79652	1298 bp upstream
Tssr79653	transcription start site region 79653	1364 bp upstream
Tssr79654	transcription start site region 79654	1389 bp upstream
Tssr79655	transcription start site region 79655	1434 bp upstream