rs46723443 SNP Detail

Summary

• ID
  rs46723443
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:139519250 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAGGAGGG ACATTGTTTC
  TAAGAATTTT GTGTGGTATT ATCACTTGCC ATGTTTGCTT TGTTCCTGAT ATCCTGCATT
  AGCTAGGACT TTTATCTGTG ATAAAAAGGC TGTTGCTTTG CTTCTTACCT CATCTCTCTC
  AAATCTGTCC CTCCCTCAAT GTCTTTCTTA TGCCAGTGAT AAAAGTATTT TAAGTTGTGG
  K
  TGTGCCATCC ATCCCTGGTG GCATCTCTGC AAACAACAAT TTAAAGGTTA TTTTTACATA
  TCACTTATAT GTGATTAAGC CTTTAGGGAA TATGACAAAG ATACCCAGTG GTGCAGAATA
  GGAATCCTTT AAATAAGGTG AAATTTTCAG TGATAATTGC TGCGAGGTAA AAATGTCTTT
  CATTCCTGAG CAGCCAGAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61086377	NES16598857	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46723443					SNP	G	G	G	G	G	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61086377	NES16598857	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:139519250 () rs orientation: forward

Symbol	Name	Function Class
Gm43678	predicted gene 43678	725 bp upstream
Rr74613	regulatory region 74613	590 bp distal