rs46723607 SNP Detail

Summary

• ID
  rs46723607
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:151351850 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCAT GTCACACAAA GCGTCCCATT
  R
  TGATATCCTG AGCATCTATT GAGGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60861247	NES15995697	PERLEGEN	MM_PANEL2	f	SNP		A	G	A	G	A	A	G	A		G	G	A	G		G
ss144728530	ENSMUSSNP439929	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A					A
ss321724007	CHEV_5_152230960	CHEVERUD	SCREENING_POP	f	SNP										G					A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs46723607					SNP	G	A	G	A	G	A	A	G	A	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60861247	NES15995697	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:151351850 () rs orientation: forward

Symbol	Name	Function Class
D730045B01Rik	RIKEN cDNA D730045B01 gene	175 bp upstream
Gm3704	predicted gene 3704	within coordinates
Gm42906	predicted gene 42906	222 bp upstream
Rr117371	regulatory region 117371	1250 bp distal
Rr378823	regulatory region 378823	1132 bp upstream
Tssr54686	transcription start site region 54686	223 bp upstream
Tssr54687	transcription start site region 54687	198 bp upstream