CAGTATGTTT ACTCTCAACC ACATTCTTCC TCATACTACA TTCACCCAGT CACTCATTGA GCATTTACTA CAGAGCTATT AAAAAGCAAG CCTTGGGCTA GGAAGGCAGA GAGAAACAAT GAACACAGAG TCTCCATCCT GAAGAAATGC AGCCACATAG AGTGGACGAA TGCTATGCAT ATCTACCTCC TAGAATATCA Y AAGACTACGA CGCTTCCCCA GGACTGTGGG CAGCATCTGG ACCTAGCAGA CCTGTGTCCT TCTAGATTCA AAGGCCACCA ATGCTTCTTT TGCTTTTAAT TTTATTTGGC AAAGCAGCGC TGCATAAACT GTGCAAAGAC ACGACCGCTT ACACAGAATG TTAGATGCAG ATACATTACC AGCAGCAAAC TAGAAACAAA Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
NOD/ShiLtJ |
NZW/LacJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss52134649 | NES15245541 | PERLEGEN | MM_PANEL2 | f | SNP | T | T | T | T | T | C | T | T | T | T | T | T |
SNP Consensus Information | |||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
NOD/ShiLtJ |
NZW/LacJ |
WSB/EiJ |
||||
rs46723822 | SNP | T | T | T | T | T | C | T | T | T | T | T | T |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss52134649 | NES15245541 | PERLEGEN | MM_PANEL | f | SNP | C/T |
Location: Chr10:7505870 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Pcmt1 | protein-L-isoaspartate (D-aspartate) O-methyltransferase 1 | within coordinates | ||||||
Rr220299 | regulatory region 220299 | 270 bp distal | ||||||
Rr220302 | regulatory region 220302 | within coordinates | ||||||
Rr228712 | regulatory region 228712 | 1331 bp proximal | ||||||
Tssr92302 | transcription start site region 92302 | 771 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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