rs46724402 SNP Detail

Summary

• ID
  rs46724402
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127273899 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAAATAAC AGCTAACTTT
  GAAATCCATT TTAAAATACA TCGATGATTT GAAAACAGGT ACAACATGAA AATGAAAATT
  AAATAACTGC CTAACTATGA AATTATCCTT TTAACATTTT TTTTAGTTCA ATTCTGGGTG
  AATCAAGATG GCCTCTTTAT GTTTCTTTCT ACAGTCCTCT TGCCCTGATT CCTTCCTAAT
  S
  GTTTCTCTCC TGTGTACAGT ACCTTAGTCT CAATGGGAGG AGCTTTGAAA GGACCCCCTC
  CTTGAGCCCC TATTTGTTGT CTGGTTTTTG TTGTCTCCTG GCATACTTTC TCATAGCAAT
  AGCCATAAAG GACATGTTTC TGCTTCAGGT AACCACATTC AGGGCAAATG TTGGGAGCTA
  TTAAGACAAC TCTTGATCTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss61079339	NES16587423	PERLEGEN	MM_PANEL2	f	SNP	G		G	C	G	C	G	C	C	C	C		C	C	C		C
ss135864426	ENSMUSSNP139644	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						C
ss320954483	CHEV_3_127183168	CHEVERUD	SCREENING_POP	f	SNP												C				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs46724402					SNP	G	G	G	C	G	C	G	C	C	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61079339	NES16587423	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127273899 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	within coordinates
Gm42525	predicted gene 42525	within coordinates
Gm43355	predicted gene 43355	within coordinates
Gm54939	predicted gene, 54939	870 bp upstream