rs46725463 SNP Detail

Summary

• ID
  rs46725463
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:52747443 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGTCCAAT CCAACCCAGA
  TACAGAATTG ACCTATTTCA GTTCTGGTGC CTTAACTTCC CCTTTCCTGT CATCCTGTCA
  TCTGGGCCAA ACAGCCAGCT ATTGAACTGA GTACTTGTGT GTATTTAGAA ACGTGAGCAC
  TTATTTATTA TGCAATTTCT TTAGAGATAG CTTTTAGCTC ACAATAGGGC AACATACATA
  K
  TGCATTGTAA TGTGAGGAAC ATGTTAGCTA GAGACCGGCA AATTGGCCAA AAGCCAAATG
  TAAAGGCTAT GTGTTCTTGC TTCAACAGCG AGTCACTGCC ACCTTAGCTG CTCTTATGTC
  TTTAAGGCCT AAGCAAACAC TTAGCAATTA GAAGGAAAGT ATCCAAACTA GAAATACTAT
  AGTGGTGACA TAATTTTTAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63131454	NES17435837	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	T	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46725463					SNP	G	G	G	G	G	G	G	G	G	T	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63131454	NES17435837	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:52747443 () rs orientation: forward

Symbol	Name	Function Class
Tssr151055	transcription start site region 151055	1537 bp upstream
Tssr151056	transcription start site region 151056	1653 bp upstream
Zfp474	zinc finger protein 474	1544 bp upstream