GATTGGAGAG GAGAAGCCGA GGTTAGACCG CGGCGAGGGC CTACGGGCAC AGGTTAGCCG CGGCTAAGCC TCCGCACCCA GGGCCTCCTC CCTGGTCTGG GGAAGTAAGC TGTGGGAAGT AAAAGGAGGA AAGTGGTTTG CAGGGACGGC TGGCTTCAGG TGTCCCAAGG TGAGGCGGGA AGAAGCCAAG GCAAGTCAGG R AAGTTTGTGA TGGAGACAAA GTTTGGAGGT GCGCAGGAAG TTGCTTGTGC CGCAGGGAGA AACCGAGACA GGCGCTTCGA CCTTTGCAGA TGGCCCTGGA AAGACTCAGC CCCATAGCTC TCTGCGCGAT CGTGCGCCTG CTGGGTCCTC TCGGCGGATA ATCTGCCCAA GCAGTGTGCA GGCCCGGTCG CCCGGCTTGG R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
BTBR T<+> Itpr3 |
CAST/EiJ |
KK/HlJ |
LG/J |
NZW/LacJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss61417122 | NES16801211 | PERLEGEN | MM_PANEL2 | f | SNP | G | G | G | G | G | A | G | ||
ss322997870 | CHEV_9_69138815 | CHEVERUD | SCREENING_POP | f | SNP | A | G | |||||||
SNP Consensus Information | ||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
BTBR T<+> Itpr3 |
CAST/EiJ |
KK/HlJ |
LG/J |
NZW/LacJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
||||
rs46725808 | SNP | G | G | G | G | A | G | A | G | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss61417122 | NES16801211 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr9:69198290 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi21987 | CpG island 21987 | within coordinates | ||||||
Rora | RAR-related orphan receptor alpha | Intron | ||||||
Rr682144 | regulatory region 682144 | 1316 bp distal | ||||||
Rr682145 | regulatory region 682145 | within coordinates | ||||||
Tssr85840 | transcription start site region 85840 | 1159 bp downstream | ||||||
Tssr85841 | transcription start site region 85841 | 1113 bp downstream | ||||||
Tssr85842 | transcription start site region 85842 | 1101 bp downstream | ||||||
Tssr85843 | transcription start site region 85843 | 1071 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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