rs46726690 SNP Detail

Summary

• ID
  rs46726690
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:75715209 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGGTAGAT AGCCGGGCAG
  GCCGGGCAGT GATGGGACAC ACATTTAATC CTAGCATTCT AGAGACAGGC AGGTGCTCTG
  GAGGCAAAGG CAGGAGGATC TCTGAGTTCA AGGCCAGCAT AATCTACAGA GAAAGTTCCA
  GGACAGCCAA GTTAGGCACT GAAGGAGTTG AAAAACAAAA GGTTGGTGAT AATGTCATAA
  G
  ACAAGGTGCC CATGTCCCAG CTCCAGCAAG CAGCAGAACT CAGCAGCTTC GGGCATGTGG
  CTCTGGCTTT AGAGTCAAGA ATAGAAGGGA CTACTGGGGC AATTGATGCT GTTTAGCTGG
  AGCTAAGAAA TTAGTGGTGA TTATGAAGAG ACCAGCATCA CTGAGGTGAA ATCTTCTGGG
  AAGTATTTTC TAAAAGCAGA                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148164741	ENSMUSSNP88144	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46726690					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:75715209 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7192	CpG island 7192	975 bp distal
Gm34851	predicted gene, 34851	145 bp upstream
Gm62305	predicted gene, 62305	856 bp downstream
Rr390927	regulatory region 390927	116 bp upstream
Rr404450	regulatory region 404450	1178 bp downstream
Rr504550	regulatory region 504550	1456 bp distal
Rr504551	regulatory region 504551	1252 bp distal
Rr504552	regulatory region 504552	781 bp distal
Rr504553	regulatory region 504553	868 bp proximal
Tssr131679	transcription start site region 131679	1227 bp downstream
Tssr134873	transcription start site region 134873	1428 bp upstream
Tssr134874	transcription start site region 134874	1406 bp upstream
Zc3h3	zinc finger CCCH type containing 3	1445 bp upstream