rs46727038 SNP Detail

Summary

• ID
  rs46727038
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45176943 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGAAAGTG ATTCCAATCC
  AGGTGGCCCT GGGGAGCATC ATACCTTTAG TTCTGAGAAC TTCCGGATGG AAATCTTGTA
  AACTCGGAGA TCCTTGAAGA CTTGTTCGTA CTCATCCCCT GCAGGGGTTA TCGTGGGCCT
  GGGGGGATGG ATTGTCCCAT AGATGATGCC GTCCATTGCT TTCAGAGTCA CGCTATCCAC
  Y
  GTCAGAATCA CTAAGTGAGA GACAGGTGAA GACATGAGGG CAAAGGCTAG GGAGAGCATC
  CAGAGCCTCA CTCTAGGATC AAACCTTTCC AACTCTAAAA CCTAGACCTC AGGTTTACAG
  CTCTACCCCG CATGAGAACA TCTTAGAGAA TGTGTCTTAT GGGTCTCTAG CACCCAGGGA
  ATTGAATAGC TCAGCCTGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61388314	NES16764909	PERLEGEN	MM_PANEL2	f	SNP		T	T	T	T	T	T	T	C		T	C	C		C
ss136408219	ENSMUSSNP5025181	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T					T
ss322942735	CHEV_9_45073728	CHEVERUD	SCREENING_POP	f	SNP										C				T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs46727038					SNP	C	T	T	T	T	T	T	T	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61388314	NES16764909	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45176943 () rs orientation: forward

Symbol	Name	Function Class
Il10ra	interleukin 10 receptor, alpha	within coordinates
Mir7086	microRNA 7086	998 bp downstream
Tssr84758	transcription start site region 84758	750 bp downstream
Tssr89257	transcription start site region 89257	1455 bp upstream
Tssr89258	transcription start site region 89258	1411 bp upstream
Tssr89259	transcription start site region 89259	1394 bp upstream