rs46729682 SNP Detail

Summary

• ID
  rs46729682
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:174128284 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGTC AAGGCACAGG CTGAGTACGG
  R
  GGTCGTGGCT ATCACTCTGA CACCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148341310	ENSMUSSNP7182539	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
ss320627361	CHEV_2_174111992	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46729682					SNP	G	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174128284 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12855	CpG island 12855	within coordinates
Gm56457	predicted gene, 56457	117 bp upstream
Gnas	GNAS complex locus	within coordinates
Gnasas1	GNAS antisense RNA 1	within coordinates
Rr56204	regulatory region 56204	within coordinates
Rr56205	regulatory region 56205	916 bp proximal
Rr374310	regulatory region 374310	465 bp upstream
Tssr22088	transcription start site region 22088	1866 bp downstream
Tssr22089	transcription start site region 22089	1207 bp downstream
Tssr22090	transcription start site region 22090	1172 bp downstream
Tssr22091	transcription start site region 22091	1127 bp downstream
Tssr28006	transcription start site region 28006	1307 bp upstream
Tssr28007	transcription start site region 28007	326 bp upstream