rs46731051 SNP Detail

Summary

• ID
  rs46731051
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:29979853 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAATG GCCGCGGGAA AGCCGGCGCC
  R
  CCGCCCATTG GACGCAGCCG GCACC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60991477	NES16140575	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	A	G	G	A	A		G	A	A	A		A
ss148672291	ENSMUSSNP6515262	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							G
ss322132942	CHEV_7_31065447	CHEVERUD	SCREENING_POP	f	SNP												A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs46731051					SNP	A	A	G	G	G	G	A	G	G	A	A	A	G	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60991477	NES16140575	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:29979853 () rs orientation: forward

Symbol	Name	Function Class
1700020L13Rik	RIKEN cDNA 1700020L13 gene	605 bp upstream
Cpgi18786	CpG island 18786	within coordinates
Rr400235	regulatory region 400235	within coordinates
Rr644765	regulatory region 644765	319 bp distal
Rr644766	regulatory region 644766	364 bp distal
Rr644767	regulatory region 644767	within coordinates
Rr644768	regulatory region 644768	470 bp proximal
Rr644769	regulatory region 644769	1417 bp proximal
Rr644770	regulatory region 644770	1808 bp proximal
Tssr65667	transcription start site region 65667	286 bp downstream
Tssr65668	transcription start site region 65668	240 bp downstream
Tssr65669	transcription start site region 65669	106 bp upstream
Tssr71721	transcription start site region 71721	4 bp upstream
Wdr62	WD repeat domain 62	9 bp upstream