rs46731963 SNP Detail

Summary

• ID
  rs46731963
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:107093779 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACACTAAG CACTGTGAGT
  CTAATAGCCA AAATAATAAA AATAAATAAA GTAAAAAAAT AGATAAAGGT CTCTACGGTT
  TCTCAAGGCC AAGCCACTTG TGAGACCTGG GGCTGCGTGC AAAGCTGCAG TCCATTCTAT
  GAGGTCATCT TTCCAGAAGA AAAGGCAGTA TGGAAGGATA CTAAATCAGC CTGGCAGGAG
  R
  AGCTGCTGAG GCTCTGTGGA AGTCAGGCAC TGATGACCGA GGGATGCTTC CCTCATCCCA
  AGCTTGGGAT GGATGCTGGC TCATACAACC TCTGTCTCCT GTGGAGACAG AGGACAGCAG
  AGGGCCCGGG TGAAAGAGCA GAGTTGTTTG TCTGGATGCA AGGAAGGACA CACACATTGC
  TCACTGTATG GAAATACTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss61696987	NES17648999	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs46731963					SNP	A	A	A	A	A	A	G	A	A	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61696987	NES17648999	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:107093779 () rs orientation: forward

Symbol	Name	Function Class
Gm16084	predicted gene 16084	within coordinates
Rr369597	regulatory region 369597	1153 bp downstream