rs46732101 SNP Detail

Summary

• ID
  rs46732101
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126220847 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCAGTTGC CCTGAGGTAG
  AATTGGACAG CCTTCAAGGA AGCCAGTCCT ATTCTTCTTG TTCTTCTTGG CACTAAGGAA
  ACCAGACATT CCTGAGAACA CTGAGATAGG ACCAAAAGCT TGCTTGGTTG CTTGATTTAT
  TGGGTGTCAC TTTGAGTCCT GGTTGGCCTG GAGTACTGAG ATAGGACCAG AAGCAGCTTT
  Y
  ACTCCCTCCC TCCGCCCCCA ACCCCCTTCT CTAGATAGGG TGTCGCTATG AGTCCTGGCT
  GGCCTGGAAC TACATAAACT AGGCTGGCTT CAAACTCATA AACTCTGCCT GCCTCTGTCT
  TCCGAATGCT GGGACTACGG ATGTGAGCTA CCATGCCCAG CCAGACCAGA AATTGTCCTA
  ATGTTCCCAG CTGCACAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss145875084	ENSMUSSNP3104438	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs46732101					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126220847 () rs orientation: forward

Symbol	Name	Function Class
Gm39087	predicted gene, 39087	24 bp upstream
Nupr1	nuclear protein transcription regulator 1	1571 bp downstream
Rr655535	regulatory region 655535	1816 bp distal
Rr655536	regulatory region 655536	within coordinates
Rr655537	regulatory region 655537	218 bp proximal
Rr655538	regulatory region 655538	712 bp proximal
Tssr69045	transcription start site region 69045	1229 bp upstream
Tssr69046	transcription start site region 69046	1570 bp upstream
Tssr69047	transcription start site region 69047	1772 bp upstream